Test Code CIMT Coccidioides immitis/posadasii, Molecular Detection, PCR, Paraffin, Tissue
Useful For
Rapid detection of Coccidioides DNA
Aiding in the diagnosis of coccidioidomycosis using paraffin-embedded tissue specimens
Disease States
- Coccidioidomycosis
Method Name
Real-Time Polymerase Chain Reaction (PCR)
Reporting Name
Coccidioides PCR, FFPESpecimen Type
Tissue, ParaffinNecessary Information
Specimen source is required.
Specimen Required
Preferred Paraffin-embedded tissue block:
Supplies: Tissue Block Container (T553)
Specimen Type: Formalin-fixed, paraffin-embedded tissue block (FFPE)
Sources: Body tissue
Container/Tube: Tissue block
Collection Instructions: Submit a formalin-fixed, paraffin-embedded tissue block to be cut and returned.
Acceptable Paraffin-embedded tissue block:
Specimen Type: Formalin-fixed, paraffin-embedded tissue block (FFPE)
Sources: Body tissue
Container/Tube: Sterile container for each individual cut section (scroll).
Collection Instructions: Perform microtomy and prepare five separate 10-micron sections. Each section (scroll) must be placed in a separate sterile container for submission.
Specimen Minimum Volume
See Specimen Required.
Specimen Stability Information
Specimen Type | Temperature | Time | Special Container |
---|---|---|---|
Tissue, Paraffin | Ambient (preferred) | ||
Refrigerated |
Reject Due To
Any non-FFPE tissue blocks FFPE bone marrow FFPE slides FFPE body fluids | Reject |
Clinical Information
Coccidioidomycosis is caused by the dimorphic fungi, Coccidioides immitis and Coccidioides posadasii. These organisms are endemic to the southwestern regions of the United States, northern Mexico, and areas of Central and South America, with recent literature suggests the geographic area of endemicity may be expanding over time.
The gold standard for the diagnosis of coccidioidomycosis is culture of the organism from clinical specimens due to its high sensitivity. However, growth in culture may take up to several weeks, which can delay diagnosis and treatment. In addition, the propagation of Coccidioides species in the clinical laboratory is a significant safety hazard to laboratory personnel.
This polymerase chain reaction method can identify Coccidioides species directly from clinical specimens, allowing for a rapid diagnosis, and should be used in conjunction with culture. For specimen types such as formalin-fixed, paraffin-embedded tissue, culture is not possible, but the molecular test may provide useful information.
Reference Values
Not applicable
Interpretation
A positive result indicates presence of Coccidioides DNA.
A negative result indicates absence of detectable Coccidioides DNA.
An inhibition result indicates that the detection of Coccidioides DNA is inhibited in this specimen. A new specimen can be resubmitted under a new order, if desired.
Day(s) Performed
Monday through Sunday
Report Available
5 to 7 daysSpecimen Retention Time
7 days; after which time the block will be returned to the clientPerforming Laboratory
Mayo Clinic Laboratories in RochesterTest Classification
This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.CPT Code Information
87798
LOINC Code Information
Test ID | Test Order Name | Order LOINC Value |
---|---|---|
CIMT | Coccidioides PCR, FFPE | 95913-0 |
Result ID | Test Result Name | Result LOINC Value |
---|---|---|
CIRR | Coccidioides PCR, FFPE, Result | 95913-0 |
SRCCI | Coccidioides PCR, FFPE, Source | 31208-2 |