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Test Code ISNP Inherited Sensory Neuropathy Gene Panel, Varies


Ordering Guidance


Targeted testing for familial variants (also called site-specific or known mutations testing) is available for the genes on this panel. See FMTT / Familial Variant, Targeted Testing, Varies. To obtain more information about this testing option, call 800-533-1710.

 

Customization of this panel and single gene analysis for any gene present on this panel are available. For more information see CGPH / Custom Gene Panel, Hereditary, Next-Generation Sequencing, Varies.



Shipping Instructions


Specimen preferred to arrive within 96 hours of collection.



Specimen Required


Patient Preparation: A previous bone marrow transplant from an allogenic donor will interfere with testing. For instructions for testing patients who have received a bone marrow transplant, call 800-533-1710.

Specimen Type: Whole blood

Container/Tube: Lavender top (EDTA) or yellow top (ACD)

Acceptable: Any anticoagulant

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood.

2. Send whole blood specimen in original tube. Do not aliquot.

Specimen Stability Information: Ambient (preferred)/Refrigerated

Additional Information: To ensure minimum volume and concentration of DNA is met, the preferred volume of blood must be submitted. Testing may be canceled if DNA requirements are inadequate.


Forms

1. New York Clients-Informed consent is required. Document on the request form or electronic order that a copy is on file.

The following documents are available:

-Informed Consent for Genetic Testing (T576)

-Informed Consent for Genetic Testing (Spanish) (T826)

2. Molecular Genetics: Neurology Patient Information

3. If not ordering electronically, complete, print, and send a Neurology Specialty Testing Client Test Request (T732) with the specimen.

Useful For

Establishing a molecular diagnosis for patients with hereditary sensory (HSN) and autonomic neuropathy (HSAN)

 

Identifying variants within genes known to be associated with HSN and HSAN, allowing for predictive testing of at-risk family members

Genetics Test Information

This test utilizes next-generation sequencing to detect single nucleotide and copy number variants in 23 genes associated with hereditary sensory neuropathy: AIFM1, ATL1, ATL3, CLCF1, CLTCL1, COX20, CRLF1, DNMT1, DST, ELP1, GLA, KIF1A, NGF, NTRK1, PRDM12, PRKCG, RETREG1, SCN10A, SCN11A, SCN9A, SPTLC1, SPTLC2, and WNK1. For more information see Method Description and Targeted Genes and Methodology Details for Inherited Sensory Neuropathy Gene Panel.

 

Identification of a disease-causing variant may assist with diagnosis, prognosis, clinical management, recurrence risk assessment, familial screening, and genetic counseling for hereditary sensory neuropathy.

Method Name

Sequence Capture and Targeted Next-Generation Sequencing followed by Polymerase Chain Reaction (PCR) and Sanger Sequencing

Reporting Name

Sensory Neuropathy Gene Panel

Specimen Type

Varies

Specimen Minimum Volume

1 mL

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Reject Due To

All specimens will be evaluated at Mayo Clinic Laboratories for test suitability.

Clinical Information

The hereditary sensory and autotomic neuropathies (HSAN), or hereditary sensory neuropathies (HSN) if autonomic dysfunction is absent, are one of the major categories of inherited peripheral neuropathies. They predominantly feature slowly progressive loss of multimodal sensation and autonomic dysfunction. The HSAN have a range of phenotypes from pure sensory involvement through phenotypes with levels of motor involvement and minor autonomic disturbances, to almost pure autonomic neuropathies. The most common features of HSAN include the loss of sensation of pain and temperature.

 

HSAN are subdivided into types 1 through 5 based on age of onset, inheritance pattern, and clinical features. HSAN type 1 follows an autosomal dominant inheritance pattern with juvenile through adult onset. Clinically this group is variable but can include severe sensory loss and autonomic dysfunction. HSAN type 2 follows an autosomal recessive inheritance pattern with onset in infancy or early childhood. This group is predominantly a sensory neuropathy with distal numbness and progressive loss of pain, temperature, and touch sensation. Motor involvement is not common in patients with HSAN type II. HSAN type 3 is also called familial dysautonomia and has autosomal recessive inheritance. Patients present with prominent, widespread autonomic disturbances, as well as small-fiber sensory dysfunction. HSAN type 4 is also called congenital insensitivity to pain with anhidrosis and has autosomal recessive inheritance. HSAN type 5 strongly resembles HSAN type 4, but patients show hypohidrosis instead of anhidrosis and do not have intellectual disability.

Reference Values

An interpretive report will be provided.

Interpretation

All detected variants are evaluated according to American College of Medical Genetics and Genomics recommendations.(1) Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

Day(s) Performed

Varies

Report Available

21 to 28 days

Specimen Retention Time

Whole blood: 2 weeks (if available); Extracted DNA: 3 months

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81448

LOINC Code Information

Test ID Test Order Name Order LOINC Value
ISNP Sensory Neuropathy Gene Panel 103729-0

 

Result ID Test Result Name Result LOINC Value
617598 Test Description 62364-5
617599 Specimen 31208-2
617600 Source 31208-2
617601 Result Summary 50397-9
617602 Result 82939-0
617603 Interpretation 69047-9
618182 Additional Results 82939-0
617604 Resources 99622-3
617605 Additional Information 48767-8
617606 Method 85069-3
617607 Genes Analyzed 48018-6
617608 Disclaimer 62364-5
617609 Released By 18771-6

Testing Algorithm

For more information see Hereditary Peripheral Neuropathy Diagnostic Algorithm